rs1371044 chr2:144938340 G>A
- Sequence
gcctgctggcttggggagtgtggg[G/A]gaacagcagagtgtgatggcagag
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN ANDR_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.87 | 2.45 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.11 | -1.01 | 2.00 | 0.37 | Weak Discordant | |||
| KDM1A_HUMAN | -1.62 | 2.18 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GRASP aortic valve calcium, coronary artery disease (cad), diastolic blood pressure (dbp), partial epilepsy, serum creatinine, systolic blood pressure (sbp)