rs1372047 chr8:94528860 C>T
- Sequence
atacagtcaggcagtttaggctgg[C/T]tggttaaacaggggagattaaagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 WS8 cells
- ASB for transcription factors
- GRHL2_HUMAN ESR1_HUMAN ARI1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 2.09 | -0.30 | 2.00 | 0.34 | Weak Discordant | |||
| ESR1_HUMAN | 0.92 | 0.30 | 1.71 | n/a | No Hit | |||
| ARI1A_HUMAN | 1.09 | -0.00 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Testis, Thyroid