rs1373237 chr7:135942792 T>C
- Sequence
aaacttgctcaaacccagagttat[T/C]aagcagaactgagaactaaacttg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- SPI1_HUMAN MEF2B_HUMAN REQU_HUMAN BACH1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.33 | -1.25 | 1.50 | -0.80 | Weak Concordant | |||
| MEF2B_HUMAN | 2.90 | -2.88 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.80 | -0.29 | 1.33 | n/a | n/a | |||
| BACH1_HUMAN | 2.83 | -2.82 | 1.00 | n/a | No Hit | |||
| JUNB_HUMAN | 2.47 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
