rs1373957 chr5:84262087 A>G
- Sequence
tgttttagtttaaaacactctgga[A/G]agtcccttaaaagaacctacagtt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RELB_HUMAN IKZF2_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RELB_HUMAN | 2.55 | -1.07 | 1.25 | -7.36 | Concordant | |||
| IKZF2_HUMAN | 2.38 | -2.07 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.35 | -1.88 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol, mitral annular calcium