rs13757 chr1:205632071 G>A

Sequence
accctaaggggtgtcgtgagccgc[G/A]tctgccagcaaacccgggtttggt
ASB in cell types
HEK293 (embryonic kidney) A549 (lung carcinoma) CD14+ monocytes HCT-116 (colon carcinoma)
ASB for transcription factors
STAT1_HUMAN HCFC1_HUMAN SMC1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 1.61 n/a 3.7·10-31.00 3.00 n/a No Hit
HCFC1_HUMAN 1.63 -2.85 0.021.00 1.50 n/a n/a
SMC1A_HUMAN 0.25 2.89 0.740.05 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Spleen,  Testis,  Thyroid

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