rs1376909 chr5:102442539 C>T
- Sequence
aaattaaaggattgcacgggatta[C/T]gagatttgttgtttgcaaacttta
- ASB in cell types
- D283 Med (medulloblastoma)
- ASB for transcription factors
- OTX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | -2.99 | 1.99 | 1.50 | 0.90 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Minor_Salivary_Gland, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood