rs1380294 chr4:18022498 C>T
- Sequence
cttgtgggttcaggctgcgctttg[C/T]gttttaagtgctggaaactttccg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- SOX6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | 2.76 | -4.99 | 2.00 | 4.73 | Discordant |
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Motif analysis
Genetic associations
GRASP birth weight, fasting blood glucose, hdl cholesterol, height, parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid