rs1380295 chr4:18022408 C>G
- Sequence
gctgcccggtggccgggtctgacc[C/G]gactgctttagcttccttaggctc
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- GABP1_HUMAN GABPA_HUMAN THB_HUMAN GATD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | -3.38 | 2.21 | 1.33 | n/a | n/a | |||
| GABPA_HUMAN | n/a | 2.03 | 1.50 | n/a | No Hit | |||
| THB_HUMAN | 2.27 | n/a | 1.00 | -3.48 | Concordant | |||
| GATD1_HUMAN | -2.45 | 2.39 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.40 | -1.31 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid