rs1380994 chr8:100073550 G>A
- Sequence
ctaatcagcagcaccttgttgaca[G/A]tctcactgcttatcagtgagatct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | 1.34 | -0.03 | 1.92 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, childhood acute lymphoblastic leukemia, hdl cholesterol change with statins, ldl cholesterol, tetrology of fallot, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood