rs1382705 chr5:118198908 T>C

Sequence
cattagtctaaaatgttgaggatg[T/C]caatatttacatagcatactaaca
ASB for transcription factors
FOXA1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.29 -0.02 8.6·10-31.00 2.17 -1.51 Weak Concordant
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  hdl cholesterol,  homa-ir
GTEx eQTL Adipose_Visceral_Omentum,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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