rs1389999 chr4:14856717 C>T
- Sequence
cttgggaaaggcccgtaatagtga[C/T]gtcttccagtgtcttctgagttct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- CREB1_HUMAN ATF7_HUMAN STAG1_HUMAN ATF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 3.03 | n/a | 2.00 | -4.49 | Concordant | |||
| ATF7_HUMAN | 3.30 | n/a | 2.00 | -1.97 | Weak Concordant | |||
| STAG1_HUMAN | 2.46 | -2.49 | 1.00 | n/a | n/a | |||
| ATF3_HUMAN | 1.23 | n/a | 4.00 | -0.28 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), ldl cholesterol, microalbuminuria, systolic blood pressure (sbp), total cholesterol, total cholesterol change with statins, type 1 diabetes, gender differentiated, urinary albumin-to-creatinine ratio, waist hip ratio