rs139042 chr22:43274088 G>A
- Sequence
ccaggctggtcactaggtgtcacc[G/A]caatcaagtttttctgcccccacg
- ASB in cell types
- HPF (pulmonary fibroblasts isolated from lung tissue) ascending aorta
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.27 | 1.40 | 1.33 | 0.07 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP fasting blood glucose, hdl cholesterol, ldl cholesterol, mitral annular calcium, obesity with early age of onset (age >2), urinary albumin-to-creatinine ratio