rs1390742 chr4:78539032 G>A
- Sequence
aacatcatagaggtaactgtcacc[G/A]tgattcaattacttcctattgggt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN MEIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | n/a | 3.34 | 2.00 | n/a | n/a | |||
| MEIS2_HUMAN | -1.80 | 2.59 | 2.00 | 1.69 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Stomach, Thyroid