rs1391078 chr17:33302625 T>C
- Sequence
aaggggttgtttactctctttccc[T/C]tgtaaaagacctggccaaaccact
- ASB in cell types
- LNCaP (prostate carcinoma) LN95(Prostate adenocarcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HXB13_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.83 | -0.21 | 1.68 | n/a | No Hit | |||
| HXB13_HUMAN | 2.58 | -4.09 | 1.50 | 1.11 | Weak Discordant | |||
| ANDR_HUMAN | 2.00 | 0.55 | 1.55 | n/a | No Hit |
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Motif analysis
