rs1392295 chr3:46059612 T>A

Sequence
aaaactttcactcttacttctata[T/A]aacatgcagtatacgtattccatt
ASB in cell types
monocyte-derived macrophages from peripheral blood MDM(monocyte derived macrophages) CD14+ monocytes
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.60 1.65 1.001.6·10-6 1.40 n/a No Hit
STAT1_HUMAN -5.36 1.72 1.000.04 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  fasting insulin,  hdl cholesterol,  homa-b,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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