rs1393786 chr3:136135193 C>A
- Sequence
agaccagctggagtgaaattcaac[C/A]gttgtatatgagaggctcttgctg
- ASB in cell types
- Jurkat (T-cells) NALM-6 (adult B acute lymphoblastic leukemia)
- ASB for transcription factors
- MYB_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYB_HUMAN | 2.30 | -1.29 | 1.00 | -0.09 | Weak Concordant | |||
| KDM6A_HUMAN | 2.02 | -1.68 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, body mass index (bmi), coronary artery disease (cad), fasting insulin, hdl cholesterol, height, homa-ir, infant head circumference, total cholesterol, triglycerides, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid