rs1393904 chr9:129996188 G>A

Sequence
tgagggactggcctgtccagaaga[G/A]agctggaaacacagaaggatttag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12878 (female B-cells lymphoblastoid cell line) -1.90 2.07 1.000.02 1.00
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Motif analysis

No data available

Genetic associations

GRASP age at death with kuru exposure,  comorbid depressive syndrome and alcohol dependence,  simpson-angus scale,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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