rs139398 chr22:39148965 C>G
- Sequence
tctgggcagagggggtttccagga[C/G]tcagtctccgggaggcggggcagg
- ASB in cell types
- MDM(monocyte derived macrophages) GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- AHR_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | 1.95 | -1.34 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | 2.27 | -1.79 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood