rs1396081 chr4:121950310 T>C
- Sequence
gcgatcctggggatgcaggggtca[T/C]cccggaggtctcggcctcgggcgg
- ASB in cell types
- LUHMES (lund human mesencephalic cells) transverse colon TTC-1240 (Rhabdoid tumor of the kidney) BJ (fibroblasts)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN CDN1B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.06 | 0.56 | 1.24 | n/a | No Hit | |||
| JUN_HUMAN | -0.21 | 1.20 | 1.75 | -0.63 | Weak Discordant | |||
| CDN1B_HUMAN | 0.26 | 1.52 | 1.80 | n/a | n/a |
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Motif analysis
