rs1396149 chr17:78132581 G>C

Sequence
atgggggggctggcccagggccca[G/C]agcgtggcgacaacgctgggcgtg
ASB in cell types
BEAS-2B (bronchial epithelium) thymus-derived CD34- cells MS-1 (Small cell lung carcinoma)
ASB for transcription factors
GCR_HUMAN BC11B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 2.26 -0.47 0.020.92 2.00 n/a No Hit
BC11B_HUMAN n/a 2.75 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Testis,  Thyroid,  Whole_Blood

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