rs1396235 chr14:77124929 C>T
- Sequence
caggccgattctcctcaccttacg[C/T]ttagatgagtttcgagtaagacca
- ASB in cell types
- primary B-CLL cells GM02255 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | -0.42 | 1.13 | n/a | No Hit | |||
| BRD4_HUMAN | 2.23 | n/a | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Spleen, Whole_Blood