rs1396836 chr2:30223217 T>C
- Sequence
gcccagatcttttttcccctcttc[T/C]gagttaaacagctcaagtgctatg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.27 | -0.92 | 1.50 | 3.79 | Discordant |
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Motif analysis
Genetic associations
GRASP celiac disease, diabetic retinopathy in type 2 diabetes mellitus, ldl cholesterol, mitral annular calcium, partial epilepsy, primary rhegmatogenous retinal detachment, rheumatoid arthritis, rheumatoid arthritis and celiac disease, variant creutzfeldt-jakob disease