rs1397439 chr4:28378590 T>C

Sequence
acatttagatttatgcccaagtgt[T/C]gcttcttcaggccttctctgagca
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.98 0.83 0.020.98 1.44 n/a No Hit
RAD21_HUMAN 1.12 0.08 0.040.98 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP eye color,  hypertension (early onset hypertension),  rheumatoid arthritis,  suicide attempts in bipolar disorder,  suicide attempts in bipolar disorder (substance free),  total cholesterol change with statins
GTEx eQTL Cells_Cultured_fibroblasts

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