rs1401978 chr12:115740774 T>C
- Sequence
cacgtggtaaacactcaccaaatg[T/C]tgactggatatgagtctcatttcc
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.66 | -0.20 | 1.38 | -3.86 | Concordant | |||
| ANDR_HUMAN | 1.30 | -0.70 | 1.10 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), hdl cholesterol change with statins, ldl cholesterol, total cholesterol, triglycerides