rs1402368 chr2:189412005 G>C

Sequence
agtggaaaaagaagctagggaact[G/C]tttcttcatgcaccaaatgccttc
ASB for transcription factors
GCR_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 0.57 0.89 1.000.04 1.36 0.90 Weak Concordant
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Motif analysis

GCR_HUMAN Weak Concordant
GCR_HUMAN pic

Genetic associations

GRASP birth weight,  diabetic retinopathy in type 2 diabetes mellitus,  infant head circumference
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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