rs1402705 chr11:76210583 C>T
- Sequence
tgcgcactccggctgggcgagcgg[C/T]gaaggcgccctcttcgtgaagcgg
- ASB in cell types
- HMLER (mammary epithelial cells) OCI-LY1 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- KDM2B_HUMAN UBF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM2B_HUMAN | -5.17 | 2.99 | 2.00 | n/a | n/a | |||
| UBF1_HUMAN | -2.84 | 2.74 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Transverse, Muscle_Skeletal, Pancreas, Whole_Blood