rs1406257 chr2:180656618 A>G
- Sequence
ggagctagtgctaatgtcaaatcc[A/G]tgagtcaggtgtagttgctatgag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma) keratinocytes
- ASB for transcription factors
- FOS_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 1.27 | -1.27 | 1.00 | -0.02 | Weak Concordant | |||
| SNAI2_HUMAN | -0.27 | 1.85 | 1.00 | n/a | No Hit |
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Motif analysis
