rs1406330 chr11:127470725 C>T
- Sequence
gcagctttaatgtggcaccaacta[C/T]gtggagtatactttctctggaata
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) transverse colon LNCaP (prostate carcinoma) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.02 | 1.41 | 1.17 | n/a | n/a | |||
| CTCF_HUMAN | 0.98 | 1.59 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, irritible bowel syndrome, major depressive disorder, simpson-angus scale, tardive dyskinesia