rs1406713 chr15:92918033 C>G
- Sequence
cagttcggccattttgtaagttag[C/G]aaaataaacactaaagtgaaatgg
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) A549 (lung carcinoma) upper lobe of left lung 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA2_HUMAN ANDR_HUMAN FOXA1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 1.69 | 0.20 | 1.17 | -0.25 | Weak Concordant | |||
| ANDR_HUMAN | 0.11 | 3.05 | 1.67 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.12 | 0.86 | 1.46 | -1.44 | Weak Concordant | |||
| STAT1_HUMAN | -0.57 | 1.42 | 2.00 | 2.56 | Concordant | |||
| RAD21_HUMAN | 1.00 | 0.55 | 1.13 | n/a | n/a |
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Motif analysis
