rs1406972 chr20:62363433 C>A
- Sequence
cctggcagccgcttctgtcccggg[C/A]ctgccatctgctgggggcctgtcc
- ASB in cell types
- T47D (invasive ductal carcinoma) Jurkat (T-cells) HMEC (human mammary epithelial cells)
- ASB for transcription factors
- PRDM9_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM9_HUMAN | -2.21 | 2.64 | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | n/a | 2.55 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cortex, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Thyroid