rs1407509 chr6:157019196 T>C
- Sequence
atctgaagaggacactgggggcac[T/C]gtgagggagaatgggttggaaaga
- ASB in cell types
- K562 (myelogenous leukemia) GM12892 (female B-cells lymphoblastoid cell line) bipolar neuron GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RFX1_HUMAN MTG16_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.81 | 0.60 | 1.43 | n/a | No Hit | |||
| RFX1_HUMAN | 1.36 | -1.43 | 1.00 | n/a | No Hit | |||
| MTG16_HUMAN | 2.28 | -1.76 | 1.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.57 | -0.85 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4