rs1407885 chr1:30757036 A>G
- Sequence
ttgcccaacaagagcttgggccgg[A/G]caagttaccctaatgattagcaca
- ASB in cell types
- MDA-MB-231ERb(triple negative breast cancer) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- ESR2_HUMAN CDN1B_HUMAN JUN_HUMAN EP300_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR2_HUMAN | -0.39 | 2.01 | 2.00 | 1.01 | Weak Concordant | |||
| CDN1B_HUMAN | 0.64 | 1.57 | 1.12 | n/a | n/a | |||
| JUN_HUMAN | 0.67 | 1.75 | 1.18 | n/a | No Hit | |||
| EP300_HUMAN | -1.80 | 2.59 | 2.00 | n/a | n/a |
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Motif analysis
