rs1408285 chr6:93183948 A>C
- Sequence
gccttatctgtgataattcaatgg[A/C]ttaatggcagtacctttatctgga
- ASB in cell types
- definitive endoderm from HUES8 D283 Med (medulloblastoma)
- ASB for transcription factors
- GATA6_HUMAN OTX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA6_HUMAN | 0.62 | 1.07 | 1.00 | n/a | No Hit | |||
| OTX2_HUMAN | -0.61 | 1.36 | 1.08 | -1.92 | Weak Discordant |
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Motif analysis
