rs1408459 chr6:152302397 C>T

Sequence
ccgcaacattaggaactgacaact[C/T]tctttaaaagcagaaagcatctga
ASB in cell types
gastroesophageal sphincter
ASB for transcription factors
CTCF_HUMAN HTF4_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.55 1.12 1.003.5·10-3 1.20 n/a No Hit
HTF4_HUMAN 1.80 -1.42 0.031.00 1.25 n/a No Hit
ANDR_HUMAN n/a 2.16 1.000.05 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  asthma,  autism with low iq,  maternal transmission distortion,  parkinsons disease,  transmission distortion

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