rs1411924 chr10:33330634 C>T
- Sequence
atttataatctacattgtacacac[C/T]gacttcccccccgtagacaggcgt
- ASB in cell types
- MDM(monocyte derived macrophages) monocyte-derived macrophages from peripheral blood Th1-cells 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SPI1_HUMAN CTCF_HUMAN TBX21_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.41 | 2.82 | 1.96 | -0.39 | Weak Discordant | |||
| CTCF_HUMAN | 0.28 | 0.82 | 1.37 | -0.59 | Weak Discordant | |||
| TBX21_HUMAN | -0.05 | 1.97 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | -2.11 | 2.90 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, fasting insulin, hdl cholesterol, homa-b, homa-ir, ldl cholesterol, total cholesterol