rs1411996 chr9:68584629 T>C
- Sequence
gaattcctaggacaggacccggtc[T/C]gtggtcaagagacccgatgaaact
- ASB in cell types
- neutrophils from periferal blood CD14+ monocytes coronary artery HDF(human dermal fibroblasts)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN RUNX3_HUMAN EZH2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.91 | 1.35 | 1.40 | n/a | No Hit | |||
| STAT1_HUMAN | -1.26 | 3.21 | 1.67 | n/a | No Hit | |||
| RUNX3_HUMAN | 2.28 | -4.12 | 1.50 | -2.27 | Concordant | |||
| EZH2_HUMAN | 2.06 | 0.62 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | -1.38 | 1.66 | 1.00 | n/a | No Hit |
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Motif analysis
