rs14122 chr16:21261270 G>C

Sequence
gatcttacccaaagacttgaacac[G/C]gtggtcttctcacagtgggctggt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NFIC_HUMAN NCOA2_HUMAN FOSL1_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN n/a 1.10 1.008.3·10-12 2.00 n/a No Hit
NCOA2_HUMAN -0.17 2.11 0.821.7·10-3 2.00 n/a n/a
FOSL1_HUMAN -2.21 3.00 1.000.02 2.00 n/a No Hit
TIF1A_HUMAN -1.83 2.41 1.000.03 2.00 n/a n/a
REQU_HUMAN -3.53 1.27 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP anti-tnf treatment response in rheumatoid arthritis (by das-28 score change at 3 months),  aortic valve calcium
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Cerebellum,  Colon_Transverse,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Stomach

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