rs1414287 chr10:26448904 T>C
- Sequence
ccctaggcaaccatggtggtcaac[T/C]cttctgttttcttttttttgcttc
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) GM02630 (Fanconi anemi) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SPT5H_HUMAN STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | -0.58 | 1.59 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.19 | 0.39 | 1.36 | n/a | n/a | |||
| CTCF_HUMAN | 0.93 | 0.19 | 1.36 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood