rs1415069 chr1:92961312 G>C
- Sequence
aggaggggagcgggcgagtcctgc[G/C]cggcgcggcagggcacacggccgg
- ASB in cell types
- primary B-CLL cells HeLa (cervical adenocarcinoma) breast tumor
- ASB for transcription factors
- BRD4_HUMAN STAG1_HUMAN INT11_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 0.89 | 2.23 | 1.93 | n/a | n/a | |||
| STAG1_HUMAN | 0.46 | 1.14 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | -0.70 | 1.30 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | -1.54 | 2.49 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Thyroid, Whole_Blood