rs1416099 chr6:37137835 A>C
- Sequence
ctcggggaggccttctcccgcccc[A/C]ctctccaccccctacttctttccc
- ASB in cell types
- BEAS-2B (bronchial epithelium) iPS-derived chondrocytes iPS-derived dermal fibroblasts MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- RARA_HUMAN GCR_HUMAN JUN_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.71 | 0.23 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.95 | 0.51 | 1.12 | n/a | No Hit | |||
| JUN_HUMAN | 1.15 | -0.13 | 1.39 | n/a | No Hit | |||
| TBX21_HUMAN | n/a | 2.08 | 1.00 | n/a | No Hit |
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