rs1416234 chr1:99750051 G>C

Sequence
gttttttagttatgtcaatcagga[G/C]caactatttaaccgcagcctaacc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN NFKB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.42 -2.26 0.011.00 1.00 n/a No Hit
NFKB1_HUMAN 2.06 -2.03 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP biploar disorder (bipolar schizoaffective disorder),  college completion,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid,  Whole_Blood

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