rs1417096 chr10:16105480 A>G
- Sequence
attccgggatacacttagagagtc[A/G]tagaatgtcccctccaccagaaaa
- ASB in cell types
- BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.18 | -2.18 | 1.00 | -3.11 | Concordant |
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Motif analysis
Genetic associations
GRASP frontotemporal lobar degeneration with tdp-43 inclusions (grn mutation negative), hypertension (early onset hypertension)