rs1417420 chr13:75960903 G>T
- Sequence
tatttgctcaaggcaccagccagt[G/T]tccagtcattcaagtttcgttggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN IKZF1_HUMAN REQU_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -0.58 | 1.98 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.87 | 1.56 | 1.25 | n/a | n/a | |||
| REQU_HUMAN | -1.79 | 2.16 | 1.00 | n/a | n/a | |||
| NFAC3_HUMAN | -1.82 | 2.33 | 1.00 | 4.20 | Concordant |
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Motif analysis
Genetic associations
GRASP hdl cholesterol change with statins, major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), total cholesterol change with statins, triglycerides