rs1419934 chr7:156949580 G>C
- Sequence
cacccgcgggcgcgcctgccccgg[G/C]cgccacctgcccggctgcccccgc
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM17942 (lymphoblastoid cell) Jurkat (T-cells) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- BRD2_HUMAN KMT2A_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 0.63 | 1.96 | 1.00 | n/a | n/a | |||
| KMT2A_HUMAN | 2.06 | -1.93 | 1.00 | 2.64 | Discordant | |||
| STAG1_HUMAN | 0.60 | -0.15 | 1.06 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Spleen