rs1422673 chr5:151059427 C>T
- Sequence
gccagacagccacctgagggggcc[C/T]tgcactgggcactgacaggtacat
- ASB in cell types
- GM02630 (Fanconi anemi) GM19240 (B cells Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.27 | -0.13 | 1.29 | -1.28 | Weak Concordant | |||
| STAG1_HUMAN | 2.07 | 0.41 | 1.48 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP asthma, chronic kidney disease, eye color, hdl cholesterol, ldl cholesterol change with statins, maternal transmission distortion, myasthenia gravis, rheumatoid arthritis, systolic blood pressure (sbp), total cholesterol change with statins, transmission distortion