rs1423396 chr5:41122608 A>G
- Sequence
agggcaattttcccataccagtgt[A/G]gcgcccccagaggaaggtcatata
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.92 | 1.01 | 1.18 | -0.22 | Weak Concordant | |||
| COT1_HUMAN | 3.05 | -0.95 | 1.25 | n/a | No Hit |
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Motif analysis
