rs1423575 chr5:55934215 T>A

Sequence
tttggatcaggttggagttggaac[T/A]ccactgtttgtcaaccacatgacc
ASB in cell types
breast tumor
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 3.01 n/a 2.3·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  infant head circumference,  ldl cholesterol change with statins,  total cholesterol change with statins
GTEx eQTL Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Nerve_Tibial,  Testis,  Thyroid

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