rs1424992 chr2:53202392 A>G
- Sequence
catctactggatcagcaagttcaa[A/G]acataaatgcaaaacatttctccc
- ASB in cell types
- A549 (lung carcinoma) THP-1 (acute monocytic leukemia) foreskin keratinocyte glioblastoma cells
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.49 | 1.56 | 1.11 | n/a | n/a | |||
| CTCF_HUMAN | 0.15 | 1.28 | 1.48 | n/a | No Hit | |||
| SMC3_HUMAN | -0.21 | 1.36 | 1.18 | n/a | n/a |
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