rs1425801 chr11:35078428 C>A
- Sequence
ggagtgcagttagtttgcagcccc[C/A]agctgtttgcaccttagcattgtc
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.87 | -1.18 | 1.00 | -3.31 | Concordant | |||
| STAG1_HUMAN | 1.22 | 0.61 | 1.00 | n/a | n/a |
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Motif analysis
