rs1428864 chr5:78484440 C>T
- Sequence
gtgtggattaacttttggggaata[C/T]aataacagctgaaaaagcaatgga
- ASB in cell types
- K562 (myelogenous leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.00 | 0.69 | 1.99 |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, alzheimers disease (left hippocampal grey matter density), alzheimers disease (right hippocampal grey matter density), arthritis including non-rheumatoid, bipolar disorder, fasting insulin, hdl cholesterol, homa-b, homa-ir, neuroblastoma (brain cancer), triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Thyroid, Whole_Blood